F6HBN9_VITVI protein (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6HBN9_VITVI

SCP domain-containing protein; Belongs to the CRISP family. (181 aa)

Predicted Functional Partners:

Q9M563_VITVI

0.611

D7SHZ8_VITVI

0.543

F6H4Q6_VITVI

0.482

PAL1

0.473

F6HIT9_VITVI

0.464

F6HEB1_VITVI

0.449

D7TCJ8_VITVI

0.448

D7TVD9_VITVI

0.448

F6HEB3_VITVI

0.448

F6HGU6_VITVI

0.448

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SHZ8_VITVI	F6HBN9_VITVI	D7SHZ8	F6HBN9	GP-PDE domain-containing protein.	SCP domain-containing protein; Belongs to the CRISP family.	0.543
D7SHZ8_VITVI	Q9M563_VITVI	D7SHZ8	Q9M563	GP-PDE domain-containing protein.	Beta-1,3-glucanase; Belongs to the glycosyl hydrolase 17 family.	0.430
D7TCJ8_VITVI	F6HBN9_VITVI	D7TCJ8	F6HBN9	Phenylalanine ammonia-lyase.	SCP domain-containing protein; Belongs to the CRISP family.	0.448
D7TCJ8_VITVI	Q9M563_VITVI	D7TCJ8	Q9M563	Phenylalanine ammonia-lyase.	Beta-1,3-glucanase; Belongs to the glycosyl hydrolase 17 family.	0.476
D7TVD9_VITVI	F6HBN9_VITVI	D7TVD9	F6HBN9	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	SCP domain-containing protein; Belongs to the CRISP family.	0.448
F6H4Q6_VITVI	F6HBN9_VITVI	F6H4Q6	F6HBN9	NB-ARC domain-containing protein.	SCP domain-containing protein; Belongs to the CRISP family.	0.482
F6HBN9_VITVI	D7SHZ8_VITVI	F6HBN9	D7SHZ8	SCP domain-containing protein; Belongs to the CRISP family.	GP-PDE domain-containing protein.	0.543
F6HBN9_VITVI	D7TCJ8_VITVI	F6HBN9	D7TCJ8	SCP domain-containing protein; Belongs to the CRISP family.	Phenylalanine ammonia-lyase.	0.448
F6HBN9_VITVI	D7TVD9_VITVI	F6HBN9	D7TVD9	SCP domain-containing protein; Belongs to the CRISP family.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.448
F6HBN9_VITVI	F6H4Q6_VITVI	F6HBN9	F6H4Q6	SCP domain-containing protein; Belongs to the CRISP family.	NB-ARC domain-containing protein.	0.482
F6HBN9_VITVI	F6HEB1_VITVI	F6HBN9	F6HEB1	SCP domain-containing protein; Belongs to the CRISP family.	Phenylalanine ammonia-lyase.	0.449
F6HBN9_VITVI	F6HEB3_VITVI	F6HBN9	F6HEB3	SCP domain-containing protein; Belongs to the CRISP family.	Phenylalanine ammonia-lyase.	0.448
F6HBN9_VITVI	F6HGU6_VITVI	F6HBN9	F6HGU6	SCP domain-containing protein; Belongs to the CRISP family.	Phenylalanine ammonia-lyase.	0.448
F6HBN9_VITVI	F6HIT9_VITVI	F6HBN9	F6HIT9	SCP domain-containing protein; Belongs to the CRISP family.	Uncharacterized protein.	0.464
F6HBN9_VITVI	PAL1	F6HBN9	A5BPT8	SCP domain-containing protein; Belongs to the CRISP family.	Phenylalanine ammonia-lyase.	0.473
F6HBN9_VITVI	Q9M563_VITVI	F6HBN9	Q9M563	SCP domain-containing protein; Belongs to the CRISP family.	Beta-1,3-glucanase; Belongs to the glycosyl hydrolase 17 family.	0.611
F6HEB1_VITVI	F6HBN9_VITVI	F6HEB1	F6HBN9	Phenylalanine ammonia-lyase.	SCP domain-containing protein; Belongs to the CRISP family.	0.449
F6HEB1_VITVI	Q9M563_VITVI	F6HEB1	Q9M563	Phenylalanine ammonia-lyase.	Beta-1,3-glucanase; Belongs to the glycosyl hydrolase 17 family.	0.474
F6HEB3_VITVI	F6HBN9_VITVI	F6HEB3	F6HBN9	Phenylalanine ammonia-lyase.	SCP domain-containing protein; Belongs to the CRISP family.	0.448
F6HEB3_VITVI	Q9M563_VITVI	F6HEB3	Q9M563	Phenylalanine ammonia-lyase.	Beta-1,3-glucanase; Belongs to the glycosyl hydrolase 17 family.	0.474