STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6HDU2_VITVIUncharacterized protein; Belongs to the argonaute family. (878 aa)    
Predicted Functional Partners:
F6I5R3_VITVI
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.726
F6I2Z7_VITVI
Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.
   
 0.630
VITISV_033098
Uncharacterized protein.
   
 
 0.626
F6HNG3_VITVI
Uncharacterized protein.
    
 
 0.626
F6GWT5_VITVI
Uncharacterized protein; Belongs to the disease resistance NB-LRR family.
   
  
 0.620
F6H567_VITVI
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
    
 
 0.616
D7STV7_VITVI
Uncharacterized protein.
      
 0.615
E0CTN3_VITVI
TCP domain-containing protein.
      
 0.614
F6GX12_VITVI
Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.
   
 0.614
D7T8M7_VITVI
Tify domain-containing protein.
   
  
 0.613
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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