STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6HDY7_VITVIH15 domain-containing protein. (216 aa)    
Predicted Functional Partners:
VITISV_002271
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.845
D7SQB0_VITVI
Uncharacterized protein.
    
 0.812
D7SU26_VITVI
RPA_C domain-containing protein.
    
 0.812
F6I4A5_VITVI
Importin N-terminal domain-containing protein.
    
 0.537
D7UCN1_VITVI
Histone domain-containing protein.
   
 0.536
F6GXV9_VITVI
Uncharacterized protein.
   
 0.508
40N03_130
Kinase cdc2 homolog B; Belongs to the protein kinase superfamily.
   
 0.507
D7SQX7_VITVI
Protein kinase domain-containing protein.
   
 0.507
D7SU55_VITVI
Uncharacterized protein.
   
 0.507
D7U5N9_VITVI
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.507
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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