F6HGP8_VITVI protein (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6HGP8_VITVI

Uncharacterized protein. (225 aa)

Predicted Functional Partners:

D7SZU7_VITVI

0.735

F6H7I9_VITVI

0.735

F6HWI1_VITVI

0.735

VITISV_018446

0.721

F6H2D3_VITVI

0.721

D7TJ46_VITVI

0.720

D7TV61_VITVI

0.720

F6GYC9_VITVI

0.716

F6H1I8_VITVI

0.716

F6I0M2_VITVI

0.716

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SZU7_VITVI	D7TJ46_VITVI	D7SZU7	D7TJ46	Uncharacterized protein.	Pyr_redox_2 domain-containing protein.	0.524
D7SZU7_VITVI	D7TV61_VITVI	D7SZU7	D7TV61	Uncharacterized protein.	Pyr_redox_2 domain-containing protein.	0.524
D7SZU7_VITVI	F6GYC9_VITVI	D7SZU7	F6GYC9	Uncharacterized protein.	DHFR domain-containing protein.	0.924
D7SZU7_VITVI	F6H1I8_VITVI	D7SZU7	F6H1I8	Uncharacterized protein.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.924
D7SZU7_VITVI	F6H2D3_VITVI	D7SZU7	F6H2D3	Uncharacterized protein.	Pyr_redox_2 domain-containing protein.	0.524
D7SZU7_VITVI	F6HGP8_VITVI	D7SZU7	F6HGP8	Uncharacterized protein.	Uncharacterized protein.	0.735
D7SZU7_VITVI	F6I0M2_VITVI	D7SZU7	F6I0M2	Uncharacterized protein.	DHFR domain-containing protein.	0.924
D7SZU7_VITVI	VITISV_018446	D7SZU7	A5BNW8	Uncharacterized protein.	Pyr_redox_2 domain-containing protein.	0.524
D7TJ46_VITVI	D7SZU7_VITVI	D7TJ46	D7SZU7	Pyr_redox_2 domain-containing protein.	Uncharacterized protein.	0.524
D7TJ46_VITVI	D7TV61_VITVI	D7TJ46	D7TV61	Pyr_redox_2 domain-containing protein.	Pyr_redox_2 domain-containing protein.	0.906
D7TJ46_VITVI	F6GYC9_VITVI	D7TJ46	F6GYC9	Pyr_redox_2 domain-containing protein.	DHFR domain-containing protein.	0.696
D7TJ46_VITVI	F6H1I8_VITVI	D7TJ46	F6H1I8	Pyr_redox_2 domain-containing protein.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.696
D7TJ46_VITVI	F6H7I9_VITVI	D7TJ46	F6H7I9	Pyr_redox_2 domain-containing protein.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.526
D7TJ46_VITVI	F6HGP8_VITVI	D7TJ46	F6HGP8	Pyr_redox_2 domain-containing protein.	Uncharacterized protein.	0.720
D7TJ46_VITVI	F6HWI1_VITVI	D7TJ46	F6HWI1	Pyr_redox_2 domain-containing protein.	DAO domain-containing protein.	0.527
D7TJ46_VITVI	F6I0M2_VITVI	D7TJ46	F6I0M2	Pyr_redox_2 domain-containing protein.	DHFR domain-containing protein.	0.696
D7TJ46_VITVI	VITISV_018446	D7TJ46	A5BNW8	Pyr_redox_2 domain-containing protein.	Pyr_redox_2 domain-containing protein.	0.903
D7TV61_VITVI	D7SZU7_VITVI	D7TV61	D7SZU7	Pyr_redox_2 domain-containing protein.	Uncharacterized protein.	0.524
D7TV61_VITVI	D7TJ46_VITVI	D7TV61	D7TJ46	Pyr_redox_2 domain-containing protein.	Pyr_redox_2 domain-containing protein.	0.906
D7TV61_VITVI	F6GYC9_VITVI	D7TV61	F6GYC9	Pyr_redox_2 domain-containing protein.	DHFR domain-containing protein.	0.696