STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6HI22_VITVIUncharacterized protein. (680 aa)    
Predicted Functional Partners:
GCN1L1
Uncharacterized protein.
 
     0.917
D7TVM3_VITVI
Uncharacterized protein.
   
 
 0.845
F6HXP6_VITVI
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
   
 
 0.824
E0CV06_VITVI
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
    
   0.792
VITISV_026180
WD_REPEATS_REGION domain-containing protein.
   
 
 0.767
F6H9T9_VITVI
PUA domain-containing protein.
   
 
 0.767
D7TZU4_VITVI
OBG-type G domain-containing protein.
   
 
 0.753
VITISV_002374
Ribosomal_S10 domain-containing protein.
   
   0.733
D7UAE2_VITVI
Ribosomal_S10 domain-containing protein.
   
   0.733
D7SJS8_VITVI
S1 motif domain-containing protein.
   
 
 0.723
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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