STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6HNZ4_VITVIUncharacterized protein. (419 aa)    
Predicted Functional Partners:
D7T1D9_VITVI
Uncharacterized protein.
   
 0.997
F6HTT9_VITVI
RRM domain-containing protein.
   
 
 0.997
F6HAK7_VITVI
Uncharacterized protein.
   
 
 0.995
F6HCQ7_VITVI
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.995
D7U390_VITVI
Brix domain-containing protein.
   
 
 0.993
F6GXI5_VITVI
Uncharacterized protein.
   
 
 0.993
D7T050_VITVI
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
 
 0.990
D7SVC1_VITVI
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 
 0.989
D7THK7_VITVI
WD_REPEATS_REGION domain-containing protein.
   
 0.989
F6HX91_VITVI
WD_REPEATS_REGION domain-containing protein.
   
 0.989
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
Server load: low (26%) [HD]