STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6HUJ7_VITVIYTH domain-containing protein. (370 aa)    
Predicted Functional Partners:
E0CV08_VITVI
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.906
D7SIL8_VITVI
WD_REPEATS_REGION domain-containing protein.
    
 
 0.896
F6H9L6_VITVI
Uncharacterized protein.
    
 
 0.892
VITISV_016616
Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing.
    
 
 0.853
F6I6I8_VITVI
Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing.
    
 
 0.853
D7TWC4_VITVI
TPX2_importin domain-containing protein.
    
 
 0.827
F6HAK2_VITVI
CPSF_A domain-containing protein.
    
 
 0.827
D7TX16_VITVI
Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.
    
 
 0.791
D7TCL1_VITVI
Pre-mRNA cleavage factor Im 25 kDa subunit; Component of the cleavage factor Im (CFIm) complex that plays a key role in pre-mRNA 3'-processing.
    
 
 0.732
D7SYL3_VITVI
Fip1 domain-containing protein.
   
 
 0.730
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.