STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6HYE6_VITVIUncharacterized protein. (1154 aa)    
Predicted Functional Partners:
F6GT92_VITVI
Uncharacterized protein.
   
 
  0.628
F6HQ00_VITVI
Homeobox domain-containing protein.
  
  
  0.619
F6HRL7_VITVI
Uncharacterized protein.
   
 0.592
D7SZQ1_VITVI
Uncharacterized protein.
     
 0.557
F6H825_VITVI
Arf-GAP domain-containing protein.
   
 
  0.519
D7SQE4_VITVI
Uncharacterized protein.
     
 0.510
D7TIM5_VITVI
Uncharacterized protein.
     
 0.510
D7U927_VITVI
Uncharacterized protein.
     
 0.510
D7T9Y7_VITVI
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
      
 0.504
VITISV_002271
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
  
 0.503
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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