F6I605_VITVI protein (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6I605_VITVI

Uncharacterized protein. (1018 aa)

Predicted Functional Partners:

F6HDI3_VITVI

0.518

F6HDI4_VITVI

0.517

F6GVB5_VITVI

0.477

D7SL21_VITVI

0.467

F6GX09_VITVI

0.431

D7TC07_VITVI

0.423

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SL21_VITVI	F6GVB5_VITVI	D7SL21	F6GVB5	B30.2/SPRY domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.996
D7SL21_VITVI	F6GX09_VITVI	D7SL21	F6GX09	B30.2/SPRY domain-containing protein.	Uncharacterized protein.	0.804
D7SL21_VITVI	F6I605_VITVI	D7SL21	F6I605	B30.2/SPRY domain-containing protein.	Uncharacterized protein.	0.467
D7TC07_VITVI	F6I605_VITVI	D7TC07	F6I605	Uncharacterized protein.	Uncharacterized protein.	0.423
F6GVB5_VITVI	D7SL21_VITVI	F6GVB5	D7SL21	WD_REPEATS_REGION domain-containing protein.	B30.2/SPRY domain-containing protein.	0.996
F6GVB5_VITVI	F6GX09_VITVI	F6GVB5	F6GX09	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.784
F6GVB5_VITVI	F6I605_VITVI	F6GVB5	F6I605	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.477
F6GX09_VITVI	D7SL21_VITVI	F6GX09	D7SL21	Uncharacterized protein.	B30.2/SPRY domain-containing protein.	0.804
F6GX09_VITVI	F6GVB5_VITVI	F6GX09	F6GVB5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.784
F6GX09_VITVI	F6HDI3_VITVI	F6GX09	F6HDI3	Uncharacterized protein.	Uncharacterized protein.	0.822
F6GX09_VITVI	F6HDI4_VITVI	F6GX09	F6HDI4	Uncharacterized protein.	Uncharacterized protein.	0.822
F6GX09_VITVI	F6I605_VITVI	F6GX09	F6I605	Uncharacterized protein.	Uncharacterized protein.	0.431
F6HDI3_VITVI	F6GX09_VITVI	F6HDI3	F6GX09	Uncharacterized protein.	Uncharacterized protein.	0.822
F6HDI3_VITVI	F6HDI4_VITVI	F6HDI3	F6HDI4	Uncharacterized protein.	Uncharacterized protein.	0.740
F6HDI3_VITVI	F6I605_VITVI	F6HDI3	F6I605	Uncharacterized protein.	Uncharacterized protein.	0.518
F6HDI4_VITVI	F6GX09_VITVI	F6HDI4	F6GX09	Uncharacterized protein.	Uncharacterized protein.	0.822
F6HDI4_VITVI	F6HDI3_VITVI	F6HDI4	F6HDI3	Uncharacterized protein.	Uncharacterized protein.	0.740
F6HDI4_VITVI	F6I605_VITVI	F6HDI4	F6I605	Uncharacterized protein.	Uncharacterized protein.	0.517
F6I605_VITVI	D7SL21_VITVI	F6I605	D7SL21	Uncharacterized protein.	B30.2/SPRY domain-containing protein.	0.467
F6I605_VITVI	D7TC07_VITVI	F6I605	D7TC07	Uncharacterized protein.	Uncharacterized protein.	0.423