STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWRI3580_g3992DNA repair helicase RAD25. (960 aa)    
Predicted Functional Partners:
AWRI3580_g3674
DNA repair helicase RAD3.
   
 0.999
AWRI3580_g3401
RNA polymerase II transcription factor B subunit 4.
    
 0.999
AWRI3580_g3160
RNA polymerase II transcription factor B subunit 1.
   
 0.999
AWRI3580_g2999
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
   
 0.999
AWRI3580_g938
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
    
 0.999
AWRI3580_g3700
RNA polymerase II transcription factor B subunit 5.
    
 0.998
AWRI3580_g617
RNA polymerase II transcription factor B subunit 3.
    
 0.996
AWRI3580_g1534
Transcription initiation factor IIE subunit alpha.
   
 0.994
AWRI3580_g927
Transcription initiation factor IIE subunit beta.
    
 0.993
AWRI3580_g3851
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.979
Your Current Organism:
Hanseniaspora uvarum
NCBI taxonomy Id: 29833
Other names: ATCC 32369, CBS 314, DBVPG 6718, H. uvarum, Hanseniaspora apiculata, IFO 10833, Kloeckera apiculata, Kloeckeraspora uvarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.