STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWRI3580_g1799Nucleolar protein 13. (389 aa)    
Predicted Functional Partners:
AWRI3580_g1456
Ribosome biogenesis protein RPF2.
   
   0.814
AWRI3580_g1274
Nucleolar complex protein 2.
   
   0.764
AWRI3580_g103
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
    0.763
AWRI3580_g1739
25S rRNA (Cytosine(2870)-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.759
AWRI3580_g333
Ribosome assembly factor MRT4.
   
 
 0.759
AWRI3580_g1222
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
   0.753
AWRI3580_g2988
Nucleolar protein 4.
   
 
 0.744
AWRI3580_g3619
U3 small nucleolar RNA-associated protein 14.
   
   0.730
AWRI3580_g3781
Ribosome biogenesis protein ENP2.
   
  
 0.713
AWRI3580_g3553
Ribosome biogenesis protein BRX1.
   
 
 0.711
Your Current Organism:
Hanseniaspora uvarum
NCBI taxonomy Id: 29833
Other names: ATCC 32369, CBS 314, DBVPG 6718, H. uvarum, Hanseniaspora apiculata, IFO 10833, Kloeckera apiculata, Kloeckeraspora uvarum
Server load: low (28%) [HD]