AWRI3580_g2230 protein (Hanseniaspora uvarum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AWRI3580_g2230

DNA-directed RNA polymerase II subunit RPB11. (119 aa)

Predicted Functional Partners:

AWRI3580_g4023

0.999

AWRI3580_g3851

0.999

AWRI3580_g2900

0.999

AWRI3580_g3059

0.999

AWRI3580_g2375

0.999

AWRI3580_g1939

0.999

AWRI3580_g1805

0.999

AWRI3580_g1350

0.999

AWRI3580_g1352

0.999

AWRI3580_g3805

0.991

Your Current Organism:

Hanseniaspora uvarum

NCBI taxonomy Id: 29833
Other names: ATCC 32369, CBS 314, DBVPG 6718, H. uvarum, Hanseniaspora apiculata, IFO 10833, Kloeckera apiculata, Kloeckeraspora uvarum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AWRI3580_g1350	AWRI3580_g1352	A0A1E5RUU7	A0A1E5RVG8	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
AWRI3580_g1350	AWRI3580_g1805	A0A1E5RUU7	A0A1E5RR35	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
AWRI3580_g1350	AWRI3580_g1939	A0A1E5RUU7	A0A1E5RQ06	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerase II subunit RPB4.	0.999
AWRI3580_g1350	AWRI3580_g2230	A0A1E5RUU7	A0A1E5RPX2	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerase II subunit RPB11.	0.999
AWRI3580_g1350	AWRI3580_g2375	A0A1E5RUU7	A0A1E5RPS4	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerase II subunit RPB3.	0.999
AWRI3580_g1350	AWRI3580_g2900	A0A1E5RUU7	A0A1E5RJ14	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
AWRI3580_g1350	AWRI3580_g3059	A0A1E5RUU7	A0A1E5RJQ2	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
AWRI3580_g1350	AWRI3580_g3805	A0A1E5RUU7	A0A1E5R6T0	DNA-directed RNA polymerase II subunit RPB7.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.995
AWRI3580_g1350	AWRI3580_g3851	A0A1E5RUU7	A0A1E5R4I1	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.999
AWRI3580_g1350	AWRI3580_g4023	A0A1E5RUU7	A0A1E5R085	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.999
AWRI3580_g1352	AWRI3580_g1350	A0A1E5RVG8	A0A1E5RUU7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB7.	0.999
AWRI3580_g1352	AWRI3580_g1805	A0A1E5RVG8	A0A1E5RR35	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
AWRI3580_g1352	AWRI3580_g1939	A0A1E5RVG8	A0A1E5RQ06	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB4.	0.999
AWRI3580_g1352	AWRI3580_g2230	A0A1E5RVG8	A0A1E5RPX2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB11.	0.999
AWRI3580_g1352	AWRI3580_g2375	A0A1E5RVG8	A0A1E5RPS4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB3.	0.999
AWRI3580_g1352	AWRI3580_g2900	A0A1E5RVG8	A0A1E5RJ14	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
AWRI3580_g1352	AWRI3580_g3059	A0A1E5RVG8	A0A1E5RJQ2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
AWRI3580_g1352	AWRI3580_g3805	A0A1E5RVG8	A0A1E5R6T0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.996
AWRI3580_g1352	AWRI3580_g3851	A0A1E5RVG8	A0A1E5R4I1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.999
AWRI3580_g1352	AWRI3580_g4023	A0A1E5RVG8	A0A1E5R085	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.999