AWRI3580_g1305 protein (Hanseniaspora uvarum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AWRI3580_g1305

Uncharacterized protein. (506 aa)

Predicted Functional Partners:

AWRI3580_g850

0.824

AWRI3580_g3921

0.721

AWRI3580_g2889

0.659

AWRI3580_g1394

0.659

AWRI3580_g3641

0.601

AWRI3580_g4048

0.563

AWRI3580_g2529

0.563

AWRI3580_g3887

0.548

AWRI3580_g2516

0.548

AWRI3580_g2657

0.531

Your Current Organism:

Hanseniaspora uvarum

NCBI taxonomy Id: 29833
Other names: ATCC 32369, CBS 314, DBVPG 6718, H. uvarum, Hanseniaspora apiculata, IFO 10833, Kloeckera apiculata, Kloeckeraspora uvarum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AWRI3580_g1305	AWRI3580_g1394	A0A1E5RU69	A0A1E5RUK0	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.659
AWRI3580_g1305	AWRI3580_g2516	A0A1E5RU69	A0A1E5RK20	Uncharacterized protein.	UV excision repair protein RAD23.	0.548
AWRI3580_g1305	AWRI3580_g2529	A0A1E5RU69	A0A1E5RK53	Uncharacterized protein.	Putative transcription factor SEF1.	0.563
AWRI3580_g1305	AWRI3580_g2657	A0A1E5RU69	A0A1E5RJN6	Uncharacterized protein.	Protein BOI2.	0.531
AWRI3580_g1305	AWRI3580_g2889	A0A1E5RU69	A0A1E5RJZ3	Uncharacterized protein.	Cell division control protein 53; Belongs to the cullin family.	0.659
AWRI3580_g1305	AWRI3580_g3641	A0A1E5RU69	A0A1E5R856	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.601
AWRI3580_g1305	AWRI3580_g3887	A0A1E5RU69	A0A1E5R4E3	Uncharacterized protein.	Get5_bdg domain-containing protein.	0.548
AWRI3580_g1305	AWRI3580_g3921	A0A1E5RU69	A0A1E5R4I8	Uncharacterized protein.	RING-box protein pip1.	0.721
AWRI3580_g1305	AWRI3580_g4048	A0A1E5RU69	A0A1E5R044	Uncharacterized protein.	Regulatory protein LEU3.	0.563
AWRI3580_g1305	AWRI3580_g850	A0A1E5RU69	A0A1E5RYH2	Uncharacterized protein.	Suppressor of kinetochore protein 1; Belongs to the SKP1 family.	0.824
AWRI3580_g1394	AWRI3580_g1305	A0A1E5RUK0	A0A1E5RU69	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.659
AWRI3580_g1394	AWRI3580_g2516	A0A1E5RUK0	A0A1E5RK20	CULLIN_2 domain-containing protein; Belongs to the cullin family.	UV excision repair protein RAD23.	0.635
AWRI3580_g1394	AWRI3580_g2657	A0A1E5RUK0	A0A1E5RJN6	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Protein BOI2.	0.629
AWRI3580_g1394	AWRI3580_g3641	A0A1E5RUK0	A0A1E5R856	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-40S ribosomal protein S27a.	0.695
AWRI3580_g1394	AWRI3580_g3887	A0A1E5RUK0	A0A1E5R4E3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Get5_bdg domain-containing protein.	0.631
AWRI3580_g1394	AWRI3580_g3921	A0A1E5RUK0	A0A1E5R4I8	CULLIN_2 domain-containing protein; Belongs to the cullin family.	RING-box protein pip1.	0.932
AWRI3580_g1394	AWRI3580_g850	A0A1E5RUK0	A0A1E5RYH2	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Suppressor of kinetochore protein 1; Belongs to the SKP1 family.	0.896
AWRI3580_g2516	AWRI3580_g1305	A0A1E5RK20	A0A1E5RU69	UV excision repair protein RAD23.	Uncharacterized protein.	0.548
AWRI3580_g2516	AWRI3580_g1394	A0A1E5RK20	A0A1E5RUK0	UV excision repair protein RAD23.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.635
AWRI3580_g2516	AWRI3580_g2657	A0A1E5RK20	A0A1E5RJN6	UV excision repair protein RAD23.	Protein BOI2.	0.797