STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWRI3580_g1049Protein SSD1. (1243 aa)    
Predicted Functional Partners:
AWRI3580_g2234
Exosome complex exonuclease RRP6.
   
 0.903
AWRI3580_g13
Exosome complex component CSL4.
   
 0.885
AWRI3580_g1036
Exosome complex component RRP45.
   
 0.880
AWRI3580_g3815
Exosome complex component RRP40.
   
 0.873
AWRI3580_g899
Exosome complex component RRP4.
   
 0.870
AWRI3580_g1044
Exosome complex component SKI6.
   
 0.869
AWRI3580_g456
Exosome complex component RRP43.
   
 0.869
AWRI3580_g2438
Exosome complex component RRP46.
   
 0.868
AWRI3580_g1392
Elongation factor 1 alpha-like protein.
   
 0.858
AWRI3580_g3813
Exosome complex component RRP42.
   
 0.853
Your Current Organism:
Hanseniaspora uvarum
NCBI taxonomy Id: 29833
Other names: ATCC 32369, CBS 314, DBVPG 6718, H. uvarum, Hanseniaspora apiculata, IFO 10833, Kloeckera apiculata, Kloeckeraspora uvarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.