STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AWRI3580_g1021Ribosome maturation protein SDO1. (259 aa)    
Predicted Functional Partners:
AWRI3580_g23
Ribosome assembly protein 1.
  
 
 0.937
AWRI3580_g2642
60S ribosomal protein L43.
  
   0.861
AWRI3580_g778
54S ribosomal protein RML2, mitochondrial.
 
 
   0.751
AWRI3580_g2720
Cytoplasmic 60S subunit biogenesis factor REI1.
   
 
 0.689
TIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.
  
 
 0.676
AWRI3580_g333
Ribosome assembly factor MRT4.
   
 
 0.672
AWRI3580_g124
Cytoplasmic 60S subunit biogenesis factor REH1.
   
 
 0.665
AWRI3580_g3876
40S ribosomal protein S19-A.
   
 
 0.660
AWRI3580_g1956
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.650
AWRI3580_g1599
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
   
 
 0.649
Your Current Organism:
Hanseniaspora uvarum
NCBI taxonomy Id: 29833
Other names: ATCC 32369, CBS 314, DBVPG 6718, H. uvarum, Hanseniaspora apiculata, IFO 10833, Kloeckera apiculata, Kloeckeraspora uvarum
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.