Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BP3802Putative peptide ABC transporter,periplasmic peptide-binding protein; Predicted by orpheus program; predicted by glimmer program. (519 aa)    
Predicted Functional Partners:
BPP3592
Putative peptide ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.961
R02595
Putative peptide ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.961
AGAD
Putative peptide ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the ABC transporter superfamily.
 
 
 0.857
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.853
R02255
Hypothetical ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.791
PYRAB153
Putative peptide ABC transporter, permeaseprotein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.750
AGR_L_28
Hypothetical ABC transporter permease; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.748
PYRAB093
Putative peptide ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.733
PLU2492
Putative oligopeptide ABC transporter, permeaseprotein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.690
YPO2184
Putative oligopeptide ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.679
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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