Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRA0127Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (120 aa)    
Predicted Functional Partners:
PBPRA3316
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.773
PBPRA3486
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.772
Y3060
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.764
PBPRA1522
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0263 family.
  
     0.763
VV2687
Putative DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.752
Y0323
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.750
YECM
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.748
S4535
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
  
     0.746
YPO3127
Hypothetical primosomal replication protein N``; Predicted by orpheus program; predicted by glimmer program.
  
     0.745
Y0656
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.732
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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