Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VP2965Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (110 aa)    
Predicted Functional Partners:
PBPRA0352
Hypothetical intercellular adhesion protein A; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.645
VP2964
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.543
SAV0161
Putative galactosyl-transferase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.515
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
     
 0.447
WBGZ
Putative mannosyl-transferase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.430
WS2061
Hypothetical polysaccharide biosynthesis protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.430
PLU3743
Hypothetical tyrosine-protein kinase Wzc; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.429
VP1942
Putative diaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylase; Predicted by orpheus program; predicted by glimmer program.
     
 0.412
PBPRB0014
Hypothetical acyltransferase family protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.412
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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