STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PBPRA0218Putative O-antigen ligase; Predicted by orpheus program; predicted by glimmer program. (372 aa)    
Predicted Functional Partners:
PP4928
Hypothetical KDO transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.936
PBPRA0216
Putative capsular polysaccharide biosynthesis protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.817
HH0323
Putative Lex2B protein (lipooligosaccharide 5G8 epitope biosynthesis-associated protein); Predicted by orpheus program; predicted by glimmer program.
     
 0.816
S4109
Putative ADP glyceromanno-heptose 6-epimerase GmhD; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
 
   
 0.811
ECS2565
Putative lipid A biosynthesis (kdo)2-(lauroyl)-lipid IVA acyltransferase; Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A.
       0.660
PBPRA0352
Hypothetical intercellular adhesion protein A; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.560
XCC0992
Putative lipopolysaccharide biosynthesis protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.504
PBPRA1735
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.480
PBPRA2684
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.480
PLU3743
Hypothetical tyrosine-protein kinase Wzc; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.459
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.