Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
VP1468Hypothetical glycosyltransferase; Predicted by orpheus program; predicted by glimmer program. (326 aa)    
Predicted Functional Partners:
PBPRA1735
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.742
VVA0079
Putative 1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.716
PBPRA0352
Hypothetical intercellular adhesion protein A; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.704
PBPRA0349
Putative periplasmic protein involved in polysaccharide export; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.680
VP1463
Hypothetical glycosyltransferas; Predicted by orpheus program; predicted by glimmer program.
 
     0.595
PBPRA2684
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.585
VP1462
Hypothetical polysaccharide export protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.582
PBPRA1733
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.568
Y4016
Putative ribosomal protein L17; Predicted by orpheus program; predicted by glimmer program.
       0.542
PBPRA2680
Putative glycosyltransferase; Predicted by orpheus program; predicted by glimmer program.
  
     0.542
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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