Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PBPRA0352Hypothetical intercellular adhesion protein A; Predicted by orpheus program; predicted by glimmer program. (597 aa)    
Predicted Functional Partners:
PLU3743
Hypothetical tyrosine-protein kinase Wzc; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.961
VP1461
Putative glycosyltransferase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.948
VP1462
Hypothetical polysaccharide export protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.948
PBPRA0349
Putative periplasmic protein involved in polysaccharide export; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.932
VP1463
Hypothetical glycosyltransferas; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.860
VP1464
Putative membrane protein of ExoQ family, involved in exopolysaccharide production; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.853
PBPRA1735
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.820
VP1476
Hypothetical anti-anti-sigma regulatory factor; Predicted by orpheus program; predicted by glimmer program; Belongs to the anti-sigma-factor antagonist family.
 
  
 0.807
PLU4008
Putative sensor histidine kinase FexB; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.774
PBPRA0348
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.771
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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