Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GALMHypothetical protein; Converts alpha-aldose to the beta-anomer. (341 aa)    
Predicted Functional Partners:
GALK
Putative galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 0.993
ECS0397
Putative beta-galactosidase; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.935
S3323
Putative evolved beta-D-galactosidase, alpha subunit; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.931
GALM-2
Hypothetical aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
  
 
0.921
EBGC
Putative evolved beta-D-galactosidase, beta subunit; Predicted by orpheus program; predicted by glimmer program.
     
  0.900
Z5721
Putative alpha-galactosidase (melibiase); Predicted by orpheus program; predicted by glimmer program.
     
  0.900
ATU4665
Putative alpha-galactosidase; Predicted by orpheus program; predicted by glimmer program.
     
  0.900
ECS0786
Putative galactose-1-phosphate uridylyltransferase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.811
PLU2275
Putative D-xylose isomerase; Predicted by orpheus program; predicted by glimmer program; Belongs to the xylose isomerase family.
 
  
 0.764
Z5085
Putative permease; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.592
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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