Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RB1454Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (114 aa)    
Predicted Functional Partners:
PSPTO300
Putative xylose operon regulatory protein; Predicted by orpheus program; predicted by glimmer program.
  
 0.988
PBPRB0217
Hypothetical phosphoenolpyruvate-protein phosphotransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the PEP-utilizing enzyme family.
   
 
 0.823
C3973
Putative glutamate synthase, large subunit; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.794
BH1728
Putative glutamate synthase, large subunit; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.794
S4161
Putative xylulose kinase; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.790
PLU2275
Putative D-xylose isomerase; Predicted by orpheus program; predicted by glimmer program; Belongs to the xylose isomerase family.
 
   
 0.770
rpoA
Putative DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.763
PBPRA0460
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.626
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.575
FRUB
Putative PTS system, fructose-specific IIA/FPR component; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.547
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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