STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4161Putative xylulose kinase; Predicted by orpheus program; predicted by glimmer program. (483 aa)    
Predicted Functional Partners:
PLU2275
Putative D-xylose isomerase; Predicted by orpheus program; predicted by glimmer program; Belongs to the xylose isomerase family.
 
 
 0.990
SGBE
Putative sugar isomerase SgaE, AraD/FucA family; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.975
STM3483
Putative ribulose-phosphate 3-epimerase; Predicted by orpheus program; predicted by glimmer program; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.951
PSPTO300
Putative xylose operon regulatory protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.845
Y1488
Putative phosphocarrier protein HPr; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.791
RB1454
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.790
Y3310
Putative transketolase 1; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
 0.678
Y3310-2
Putative transketolase 1; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
 0.678
RS02191
Putative xylose binding periplasmic protein of ABC transport system; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.622
tal
Putative transaldolase B; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 
 0.617
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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