STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGR_C_28Putative beta-mannosidase precursor; Predicted by orpheus program; predicted by glimmer program. (812 aa)    
Predicted Functional Partners:
SC5G9.02
Putative xylosidase; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.712
CHB
Hypothetical N-acetyl-beta-hexosaminidase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.705
CHID
Putative chitinase; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.636
CEPA
Putative N,N-diacetylchitobiose phosphorylase; Predicted by orpheus program; predicted by glimmer program.
 
     0.632
VVA0485
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.623
YJGD
Conserved hypothetical protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome.
       0.602
PBPRB0321
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.563
VV20591
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.556
PULA
Putative pullulanase precursor; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 13 family.
      
 0.486
VVA0132
Putative peptide ABC transporter, periplasmicpeptide-binding protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.450
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.