Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VP2641Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (163 aa)    
Predicted Functional Partners:
RSC2927
Putative ubiquinol--cytochrome c reductase,cytochrome c1; Predicted by orpheus program; predicted by glimmer program.
  
     0.702
SF3418
Putative heat shock protein 15; Predicted by orpheus program; predicted by glimmer program; Belongs to the HSP15 family.
  
    0.623
PP5099
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.605
CV4008
Putative ubiquinol-cytochrome c reductase,iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
     0.597
SO2872
Conserved hypothetical membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.581
CV3063
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.579
SO2360
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.558
TLL0138
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.550
SO4666
Putative cytochrome c4; Predicted by orpheus program; predicted by glimmer program.
  
     0.549
HD1705
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.534
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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