STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VV2720ompL_phopr porin-like protein L precursor; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family. (341 aa)    
Predicted Functional Partners:
PBPRA2140
Hypothetical major outer membrane protein OmpU; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.924
TOXR
Transcription activator ToxR; Predicted by orpheus program; predicted by glimmer program.
      
 0.831
VV10191
ToxS; Predicted by orpheus program; predicted by glimmer program.
      
 0.783
YPO3223
Hypothetical transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.760
Y0656
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.748
VVA0122
Hypothetical maltoporin; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.746
ompH
OmpH porin-like protein H precursor; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.
     
 0.745
PBPRA0837
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0255 family.
  
     0.735
VV10298
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.730
VVA0053
Putative maltoporin; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.726
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.