Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
STM4564Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (302 aa)    
Predicted Functional Partners:
PBPRA1512
Hypothetical esterase of the alpha-betahydrolase superfamily; Predicted by orpheus program; predicted by glimmer program.
  
    0.532
VV1288
Hypothetical esterase of the alpha-beta hydrolase superfamily; Predicted by orpheus program; predicted by glimmer program.
  
    0.532
S4680
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.532
PMT1397
Putative glycogen operon protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 13 family.
       0.508
HD0887
Putative NupC family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family.
       0.500
SF3105
Putative O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
   
 0.492
METG
Putative methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
 
 0.481
SSB
Putative single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
    0.451
GMK
Putative guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
 
  
 0.429
LEPA
Putative GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
 
    0.429
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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