STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC2346Putative SerB-cotransposed membrane protein precursor; Predicted by orpheus program; predicted by glimmer program. (206 aa)    
Predicted Functional Partners:
PBPRA1522
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0263 family.
  
     0.762
STY1335
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.758
STM2335
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0304 family.
  
     0.750
Y0323
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.750
Y3060
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.742
PBPRA3486
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.742
S4534
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.740
Y0656
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.734
Z0836
Putative SeqA protein; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
  
     0.732
YPO3127
Hypothetical primosomal replication protein N``; Predicted by orpheus program; predicted by glimmer program.
  
     0.728
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.