Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CLPBPutative ATPase with chaperone activity; Predicted by orpheus program; predicted by glimmer program; Belongs to the ClpA/ClpB family. (914 aa)    
Predicted Functional Partners:
VVA0982
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.971
VV20431
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.969
VV20441
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.944
RSP0746
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.943
RSP0744
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.928
RSP0743
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.923
ATU4340
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.909
ATU4334
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.908
clpS
Conserved hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
  
 
 0.899
VV20428
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.897
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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