Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PBPRA0733Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (268 aa)    
Predicted Functional Partners:
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
 
 0.786
PBPRB0014
Hypothetical acyltransferase family protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.762
BB3755
Putative acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
   0.588
S0048
Putative bis(5-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.465
MXCG
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.416
RB11047
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.415
PP1893
Putative oxidoreductase, acyl-CoA dehydrogenase family; Predicted by orpheus program; predicted by glimmer program.
   
 0.408
S0292
Putative oxidoreductase, acyl-CoA dehydrogenase family; Predicted by orpheus program; predicted by glimmer program.
   
 0.408
CAIA
Putative acyl-CoA dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
   
 0.408
PP4064
Putative acyl-CoA dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
   
 0.408
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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