STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PA3805Hypothetical fimbrial biogenesis and twitching motility protein; Predicted by orpheus program; predicted by glimmer program. (242 aa)    
Predicted Functional Partners:
XCC3231
Hypothetical fimbrial assembly protein PilN; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.800
YPO2880
Hypothetical DNA-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.798
EBIG1843
Hypothetical fimbrial assembly protein PilP; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.779
VV11379
Hypothetical fimbrial assembly protein PilO; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.762
SF2561
Putative gcpE protein; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
  
    0.728
YPO2882
Conserved hypothetical protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
  
    0.724
RS01326
Putative fimbrial assembly protein; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.718
YPO2877
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.713
PA4556
Hypothetical fimbrial assembly protein PilE; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.695
VC2634
Hypothetical fimbrial assembly protein PilM; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.629
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.