Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
YPO2877Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (203 aa)    
Predicted Functional Partners:
STY2765
Conserved hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
  
 0.978
hisS
Putative histidyl-tRNA synthetase; Predicted by orpheus program; predicted by glimmer program.
  
    0.976
YPO2880
Hypothetical DNA-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.830
Y0131
Putative stringent starvation protein B; Predicted by orpheus program; predicted by glimmer program.
  
    0.758
STY0697
Hypothetical DNA polymerase III, delta subunit; Predicted by orpheus program; predicted by glimmer program.
  
     0.749
YFGK
Putative GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.748
VPA1271
Putative thiol:disulfide interchange protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.743
SF2561
Putative gcpE protein; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
  
    0.718
PA3805
Hypothetical fimbrial biogenesis and twitching motility protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.713
SURA
Putative survival protein SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.
  
  
 0.694
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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