STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SMC03006Putative chemotaxis protein CheY; Predicted by orpheus program; predicted by glimmer program. (122 aa)    
Predicted Functional Partners:
PBPRA0774
Hypothetical chemotaxis histidine protein kinase, CheA; Predicted by orpheus program; predicted by glimmer program.
 0.994
PSPTO198
Putative chemotaxis protein CheA; Predicted by orpheus program; predicted by glimmer program.
 0.980
SO3208
Putative chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
 0.970
PSPTO091
Hypothetical methyl-accepting chemotaxis protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.967
VV11397
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
 0.946
Y3468
Putative flagellar motor switch protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
 0.924
XAC1946
Putative polar flagellar switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
 0.924
CHEY-2
Putative chemotaxis protein CheY; Predicted by orpheus program; predicted by glimmer program.
 
 
0.920
PA1464
Putative purine-binding chemotaxis protein CheW; Predicted by orpheus program; predicted by glimmer program.
 
 0.920
CHEV-2
Putative chemotaxis protein CheV; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.914
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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