STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Y1426Putative D,D-carboxypeptidase-related protein; Predicted by orpheus program; predicted by glimmer program. (253 aa)    
Predicted Functional Partners:
T0376
Putative succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
     
 0.850
S2664
Hypothetical arsenate reductase; Predicted by orpheus program; predicted by glimmer program; Belongs to the ArsC family.
       0.823
Y1440
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.601
C5468
Putative purine nucleoside phosphorylase; Predicted by orpheus program; predicted by glimmer program.
  
    0.514
DEOD
Putative purine nucleoside phosphorylase; Predicted by orpheus program; predicted by glimmer program.
  
    0.514
PBPRA0846
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.513
YPO3233
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.499
S1572
Putative protease IV; Predicted by orpheus program; predicted by glimmer program.
      
 0.465
Z3559
Putative phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
       0.433
PLU3094
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.406
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.