Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PD2072Putative DNA methylase HsdM; Predicted by orpheus program; predicted by glimmer program. (793 aa)    
Predicted Functional Partners:
XF2722
Hypothetical type I restriction-modification system specificity determinant; Predicted by orpheus program; predicted by glimmer program.
 
 0.999
FNV1836
Putative type I restriction enzyme HsdR; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.994
ECS5306
Hypothetical Type I restriction enzyme EcoEIspecificity protein (S protein); Predicted by orpheus program; predicted by glimmer program.
 
 
 0.975
ECS5308
Putative type I restriction enzyme R protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.908
VC1766
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.868
VC1767
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.865
SF0729
Putative excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits di [...]
    
 
 0.676
VC0870
Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program.
       0.574
SA0089
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.498
PBPRA1796
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.498
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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