STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FNV1836Putative type I restriction enzyme HsdR; Predicted by orpheus program; predicted by glimmer program. (1016 aa)    
Predicted Functional Partners:
PD2072
Putative DNA methylase HsdM; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.994
XF2722
Hypothetical type I restriction-modification system specificity determinant; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.994
PP4741
Putative type I restriction enzyme EcoEI Mprotein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.920
VC1766
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   0.885
VC1767
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   0.878
ECS5306
Hypothetical Type I restriction enzyme EcoEIspecificity protein (S protein); Predicted by orpheus program; predicted by glimmer program.
 
  
 0.866
VC0870
Hypothetical transposase; Predicted by orpheus program; predicted by glimmer program.
       0.578
YPO1265
Putative ATP-dependent helicase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.566
VPA1393
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.559
YBJD
Hypothetical ATP-dependent endonuclease of the OLD family; Predicted by orpheus program; predicted by glimmer program.
  
    0.402
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.