Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
FLGMPutative negative regulator of flagellin synthesis FlgM; Predicted by orpheus program; predicted by glimmer program. (104 aa)    
Predicted Functional Partners:
PSPTO197
Hypothetical flagellar-specific transcription initiation factor sigma, LafS; Predicted by orpheus program; predicted by glimmer program; Belongs to the sigma-70 factor family.
  
 0.997
PSPTO197-5
Putative flagellar-specific RNA polymerase sigma factor, FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
  
 0.997
YPO0741
Hypothetical LafC; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.970
STY2169
Putative polar flagellar protein FlaJ; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.970
VV0957
Putative FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
 
  
 0.965
VP0770
Putative chaperone FlgN; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.964
SO3222
Hypothetical flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.943
SO0132
Putative flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.937
PSPTO193-2
Putative basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
 
  
 0.929
PA1077
Putative polar flagellar FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
  
 0.919
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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