STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VV0968Hypothetical FlgJ, Muramidase; Predicted by orpheus program; predicted by glimmer program. (317 aa)    
Predicted Functional Partners:
YPO0729
Putative flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
  
 0.998
FLGI
Putative flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
  
 0.991
PA1077
Putative polar flagellar FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.989
PSPTO193-4
Putative flagellar basal-body rod protein FlgF; Predicted by orpheus program; predicted by glimmer program; Belongs to the flagella basal body rod proteins family.
 
  
 0.988
PSPTO193-2
Putative basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
 
  
 0.987
SO3250
Hypothetical FlgB putative flagellar basal-body rod protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.986
VV0969
Hypothetical flagellar hook-associated protein FlgM; Predicted by orpheus program; predicted by glimmer program; Belongs to the flagella basal body rod proteins family.
 
  
 0.986
SO3229
Putative flagellar hook-basal body protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.986
PBPRA0928
Hypothetical polar flagellar hook-length control protein FliK; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.986
VV0957
Putative FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
 
  
 0.985
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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