STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
XCC1889Putative SOJ-like and chromosome partitioning protein; Predicted by orpheus program; predicted by glimmer program. (259 aa)    
Predicted Functional Partners:
VP2226
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.946
XAC3906
Putative ParB family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the ParB family.
 
 
 0.932
VC2058
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.868
PSPTO198-2
Protein-glutamate methylesterase, chemotaxis protein CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
    0.834
PA1464
Putative purine-binding chemotaxis protein CheW; Predicted by orpheus program; predicted by glimmer program.
 
   0.788
SO3208
Putative chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
  
 0.784
PBPRA1717
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.761
PA1454
Putative MinD-related protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.735
PBPRA0937
Hypothetical flagellar biosynthesis protein FlhF; Predicted by orpheus program; predicted by glimmer program.
 
    0.691
PSPTO198
Putative chemotaxis protein CheA; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.682
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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