STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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SO0262Putative heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. (222 aa)    
Predicted Functional Partners:
ECS3090
Putative heme exporter protein A; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.
 0.999
PM0007
Putative heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
 
 0.999
PM0009
Putative cytochrome c-type biogenesis proteinCcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
 
 
 0.994
S2410
Putative cytochrome c-type biogenesis protein CcmF; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.915
C2732
Putative thiol:disulfide interchange protein DsbE; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.890
C2731
Hypothetical cytochrome c-type biogenesis protein; Possible subunit of a heme lyase.
 
   
 0.890
PBPRA0955
Hypothetical cytochrome c-type biogenesis protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.889
PM0010
Hypothetical cytochrome c-type biogenesis protein CcmF; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.859
PHG219
Hypothetical thiol:disulfide interchange protein DsbE; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.859
NRFE
Hypothetical cytochrome c-type biogenesis protein NrfF; Possible subunit of a heme lyase.
 
   
 0.822
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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