STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Y1577Putative long-chain fatty acid transport protein; Predicted by orpheus program; predicted by glimmer program. (416 aa)    
Predicted Functional Partners:
SF2652
Conserved hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.800
Y3127
Putative surface antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.561
VP2496
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 
 0.527
SO0428-2
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 
 0.524
SO0428
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 
 0.513
STM3453
Putative FKBP-type peptidyl-prolyl cis-trans isomerase 1; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.496
XAC1550
Putative peptidyl-prolyl cis-trans isomerase, FKBP-type; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.496
FKLB
Putative peptidyl-prolyl cis-trans isomerase; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.496
YPO2744
Putative long-chain fatty acid transport protein; Predicted by orpheus program; predicted by glimmer program.
 
    
0.489
VP2733
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 
 0.479
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.