Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Z0557Putative transport ATP-binding protein MsbA; Predicted by orpheus program; predicted by glimmer program. (580 aa)    
Predicted Functional Partners:
PLU3858
Putative ATP-binding component of a transport system; Predicted by orpheus program; predicted by glimmer program.
 
  
 
0.982
ATU4786
Putative iron(III) ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
    
0.781
T1694
Putative spermidine/putrescine ABC transporter,ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
    
0.746
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
  
 0.710
BP1181
Putative amino acid ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
     
0.620
PBPRB0014
Hypothetical acyltransferase family protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.543
LL0421
Putative ATPase component, ABC-type sugar transport systems; Predicted by orpheus program; predicted by glimmer program; Belongs to the ABC transporter superfamily.
 
    
0.487
YPO0854
Hypothetical ABC-type maltose transport systems,permease component; Predicted by orpheus program; predicted by glimmer program.
  
     0.477
SPY1301
Hypothetical ABC-type sugar transport systems,permease components; Predicted by orpheus program; predicted by glimmer program.
  
     0.444
PLU2040
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.432
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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