STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BPP4109Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (597 aa)    
Predicted Functional Partners:
BPP4108
Hypothetical copper resistance protein B precursor; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.996
SMA1041
Hypothetical copper tolerance protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.941
YPO3776
Conserved hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
    
 
 0.863
HD0715
Conserved hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
   
 
 0.862
SMC02283
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.784
BCP
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.670
YDAA
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.644
BP0156
Hypothetical metal-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.628
SO4202
Putative TatA protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.620
VV20992
Hypothetical two component sensor protein; Member of a two-component regulatory system.
 
   
 0.576
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.