STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PBPRA1004Putative cation efflux system transmembrane protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (526 aa)    
Predicted Functional Partners:
S0490
Putative cation efflux system transmembrane protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.998
VV20850
Hypothetical outer membrane cation efflux protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.986
SO4090
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.719
STY3364
Putative outer membrane protein TolC; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.678
VPA1579
Putative outer membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.678
VVA1499
Putative outer membrane protein TolC; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.678
AGGA
Putative agglutination protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.678
PBPRB1758
Hypothetical ABC-transporter outer membrane component; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.678
PBPRB1861
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.678
SMC02283
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.614
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.