STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R01996Putative cation efflux family protein; Predicted by orpheus program; predicted by glimmer program. (318 aa)    
Predicted Functional Partners:
VVA1156
Putative transcriptional regulator, MarR family; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.769
Y0410
Putative cation transport ATPase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.470
PSPTO199
Putative cation transport ATPase, E1-E2 family; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.470
COPA
Hypothetical cation-transporting ATPase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.470
STY4291
Putative ferrous iron transport protein A; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.454
TLR1740
Putative ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
 
   
 0.451
S4161
Putative xylulose kinase; Predicted by orpheus program; predicted by glimmer program.
  
    0.443
S0490
Putative cation efflux system transmembrane protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.440
PBPRB1904
Hypothetical ferrous ion transport protein B; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.417
STY4386
Putative transcriptional regulator, MerR family; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.412
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.