Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PLU2133Hypothetical starvation-inducible outer membrane lipoprotein; Predicted by orpheus program; predicted by glimmer program. (184 aa)    
Predicted Functional Partners:
SO2582
Hypothetical hydrolase/acyltransferase; Predicted by orpheus program; predicted by glimmer program.
       0.768
VV1050
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.636
smg
Putative Smg protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the Smg family.
  
     0.578
YEAZ
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.574
S1535
Putative ATP-dependent helicase, DinG family; Predicted by orpheus program; predicted by glimmer program.
       0.524
FADD
Putative long-chain-fatty-acid-CoA ligase; Predicted by orpheus program; predicted by glimmer program.
     
 0.496
SO1769
Hypothetical Glutamate decarboxylase; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.486
SMB21414
Hypothetical amino acid decarboxylase; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.486
PBPRB0735
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
  
 0.476
PM1957
Hypothetical rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
  
     0.444
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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