Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RS04226Putative reductase component; Predicted by orpheus program; predicted by glimmer program. (373 aa)    
Predicted Functional Partners:
PLU2320
Hypothetical non-ribosomal peptide synthetase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.980
BA2370
Putative EntE, Peptide arylation enzymes; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.967
Y2402
Hypothetical thioesterase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.950
PLU2321
Putative AMP-binding enzyme; Predicted by orpheus program; predicted by glimmer program.
  
 0.918
S0514
Putative 2,3-dihydroxybenzoate-AMP ligase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.899
PLU3074
Hypothetical menaquinone-specific isochorismate synthase; Catalyzes the conversion of chorismate to isochorismate.
  
  
 0.890
STY0639
Hypothetical isochorismate synthase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.890
BRA0014
Putative 2,3-dihydro-2,3-dihydroxybenzoatesynthetase, isochorismatase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.859
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.837
MBTI
Hypothetical anthranilate synthase; Predicted by orpheus program; predicted by glimmer program.
     
 0.727
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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