Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ECS5306Hypothetical Type I restriction enzyme EcoEIspecificity protein (S protein); Predicted by orpheus program; predicted by glimmer program. (551 aa)    
Predicted Functional Partners:
PP4741
Putative type I restriction enzyme EcoEI Mprotein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.995
PD2072
Putative DNA methylase HsdM; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.975
ECS5308
Putative type I restriction enzyme R protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.974
PBPRA1801
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.927
FNV1836
Putative type I restriction enzyme HsdR; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.866
PM0594
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.595
PBPRA1799
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.594
PBPRA0195
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.525
PLU0386
Putative DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.459
ENDA
Putative extracellular deoxyribonucleaseprecursor; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.458
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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