Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRA1809Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (295 aa)    
Predicted Functional Partners:
PBPRA1810
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.811
Z4768
Hypothetical ComF-related protein; Predicted by orpheus program; predicted by glimmer program.
   
    0.481
STM2669
Putative chorismate mutase/prephenate dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
  
    0.463
PBPRA1808
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.424
PLU1241
Putative xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
   
    0.420
S0421
Putative adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.420
RB787-19
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.402
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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